Krauter S*, Büscher N*, Bräuchle E, Ortega Iannazzo S, Penner I, Krämer N, Gogesch P, Thomas S, Kreutz M, Dejung M, Freiwald A, Butter F, Waibler Z and Plachter B (2022) An attenuated strain of human cytomegalovirus for the establishment of a subviral particle vaccine. Vaccines, 10:1326 (*indicates joint contribution)  Link

Levin M# and Butter F# (2022) Proteotranscriptomics - A facilitator in omics research. Comput Struct Biotechnol J, 20:3667–3675 (#indicates joint correspondence)  Link

Lüders J, Winkel AR, Reichel M, Bitterer VW, Scheibe M, Widmann C, Butter F and Köster T (2022) Identification of pri-miRNA stem-loop interacting proteins in plants using a modified version of the Csy4 CRISPR endonuclease. Int J Mol Sci, 23:8961 Link

Marnik EA*, Almeida MV*, Cipriani PG*, Chung G, Caspani E, Karaulanov E, Gan HH, Zinno J, Isolehto IJ, Kielisch F, Butter F, Sharp CS, Flanagan RM, Bonnet FX, Piano F, Ketting RF#, Gunsalus KC# and Updike DL# (2022) The Caenorhabditis elegans TDRD5/7-like protein, LOTR-1, interacts with the helicase ZNFX-1 to balance epigenetic signals in the germline. PLOS Genet, 18:e1010245 (*indicates joint contribution, #indicates joint correspondence)  Link

Morishima T, Fakruddin M, Masuda T, Wang Y, Schoonenberg VAC, Butter F, Arima Y, Tomizawa K, Wei FY, Suda T and Takizawa H (2022) Terminal erythroid differentiation is regulated by mitochondrial translation via maintenance of iron homeostasis. Blood, 140:2203–2204 Link

Öztürk M, Freiwald A, Cartano J, Schmitt R, Dejung M, Luck K, Al-Sady B, Braun S, Levin M and Butter F (2022) Proteome effects of genome-wide single gene perturbations. Nat Commun, 13:6153 Link

Schmidt H, Mauer K, Glaser M, Dezfuli BS, Hellmann SL, Silva Gomes AL, Butter F, Wade RC, Hankeln T and Herlyn H (2022) Identification of antiparasitic drug targets using a multi-omics workflow in the acanthocephalan model. BMC Genomics, 23:677 Link

Schreier J, Dietz S, Boermel M, Oorschot V, Seistrup AS, de Jesus Domingues AM, Bronkhorst AW, Nguyen DAH, Phillis S, Gleason EJ, L’Hernault SW, Phillips CM, Butter F and Ketting RF (2022) Membrane-associated cytoplasmic granules carrying the Argonaute protein WAGO-3 enable paternal epigenetic inheritance in Caenorhabditis elegans. Nat Cell Biol, 24:217–229 Link

Trindade S, De Niz M, Costa-Sequeira M, Bizarra-Rebelo T, Bento F, Dejung M, Narciso MV, López-Escobar L, Ferreira J, Butter F, Bringaud F, Gjini E and Figueiredo LM (2022) Slow growing behavior in African trypanosomes during adipose tissue colonization. Nat Commun, 13:7548 Link

Vellmer T, Hartleb L, Fradera Sola A, Kramer S, Meyer-Natus E, Butter F# and Janzen CJ# (2022) A novel SNF2 ATPase complex in Trypanosoma brucei with a role in H2A.Z-mediated chromatin remodelling. PLOS Pathog, 18:e1010514 (#indicates joint contribution)  Link


Amodeo S, Kalichava A, Fradera-Sola A, Bertiaux-Lequoy E, Guichard P, Butter F and Ochsenreiter T (2021) Characterization of the novel mitochondrial genome segregation factor TAP110 in Trypanosoma brucei. J Cell Sci, 134:jcs254300 Link

Bakari-Soale M, Ikenga NJ, Scheibe M, Butter F, Jones NG, Kramer S and Engstler M (2021) The nucleolar DExD/H protein Hel66 is involved in ribosome biogenesis in Trypanosoma brucei. Sci Rep, 11:18325 Link

Berkyurek AC*, Furlan G*, Lampersberger L*, Beltran T, Weick EM, Nischwitz E, Cunha Navarro I, Braukmann F, Akay A, Price J, Butter F, Sarkies P and Miska EA (2021) The RNA polymerase II subunit RPB-9 recruits the integrator complex to terminate Caenorhabditis elegans piRNA transcription. EMBO J, 40:e105565 (*indicates joint contribution)  Link

Davies C, Ooi CP, Sioutas G, Hall BS, Sidhu H, Butter F, Alsford S, Wickstead B and Rudenko G (2021) TbSAP is a novel chromatin protein repressing metacyclic variant surface glycoprotein expression sites in bloodstream form Trypanosoma brucei. Nucleic Acids Research, 49:3242–3262 Link

Deen D, Butter F, Daniels DE, Ferrer-Vicens I, Ferguson DCJ, Holland ML, Samara V, Sloane-Stanley JA, Ayyub H, Mann M, Frayne J, Garrick D# and Vernimmen D# (2021) Identification of the transcription factor MAZ as a regulator of erythropoiesis. Blood Adv, 5:3002–3015 (#indicates joint correspondence)  Link

Dietz S*, Almeida MV*, Nischwitz E, Schreier J, Viceconte N, Fradera-Sola A, Renz C, Ceron-Noriega A, Ulrich HD, Kappei D, Ketting RF and Butter F (2021) The double-stranded DNA-binding proteins TEBP-1 and TEBP-2 form a telomeric complex with POT-1 Nat Commun, 12:2668 (*indicates joint contribution)  Link

Eisenhuth N, Vellmer T, Rauh ET, Butter F# and Janzen CJ# (2021) A DOT1B/ribonuclease H2 protein complex is involved in R-loop processing, genomic integrity, and antigenic variation in Trypanosoma brucei. MBio, 12:e01352-21 (#indicates joint correspondence)  Link

Maynard D, Viehhauser A, Knieper M, Dreyer A, Manea G, Telman W, Butter F, Chibani K, Scheibe R and Dietz KJ (2021) The in vitro interaction of 12-oxophytodienoic acid and related conjugated carbonyl compounds with thiol antioxidants. Biomolecules, 11:457 Link

Placentino M, de Jesus Domingues AM, Schreier J, Dietz S, Hellmann S, de Albuquerque BFM, Butter F and Ketting RF (2021) Intrinsically disordered protein PID-2 modulates Z granules and is required for heritable piRNA-induced silencing in the Caenorhabditis elegans embryo EMBO J, 40:e105280 Link

Pons M#, Zeyn Y, Zahn S, Mahendrarajah N, Page BDG, Gunning PT, Moriggl R, Brenner W, Butter F and Krämer OH# (2021) Oncogenic kinase cascades induce molecular mechanisms that protect leukemic cell models from lethal effects of de novo dNTP synthesis inhibition. Cancers, 13:3464 (#indicates joint correspondence)  Link

Stoldt M, Klein L, Beros S, Butter F, Jongepier E, Feldmeyer B and Foitzik S (2021) Parasite presence induces gene expression changes in an ant host related to immunity and longevity. Genes (Basel), 12:95 Link

Wagner T, Pérez-Martínez L, Schellhaas R, Barrientos-Moreno M, Öztürk M, Prado F, Butter F and Luke B (2021) Chromatin modifiers and recombination factors promote a telomere fold-back structure, that is lost during replicative senescence. PLOS Genet, 16:e1008603 Link

Worpenberg L, Paolantoni C, Longhi S, Mulorz MM, Lence T, Wessels HH, Dassi E, Aiello G, Sutandy FXR, Scheibe M, Edupuganti RR, Busch A, Möckel MM, Vermeulen M, Butter F, König J, Notarangelo M, Ohler U, Dieterich C, Quattrone A#, Soldano A# and Roignant JY# (2021) Ythdf is a N6‐methyladenosine reader that modulates Fmr1 target mRNA selection and restricts axonal growth in Drosophila. EMBO J, 40:e104975 (#indicates joint correspondence)  Link


Bruch A, Laguna T, Butter F, Schaffrath R# and Klassen R# (2020) Misactivation of multiple starvation responses in yeast by loss of tRNA modifications. Nucleic Acids Res, 48: 7307-7320 (#indicates joint correspondence) Link

Casas-Vila N, Sayols S, Pérez-Martínez L, Scheibe M and Butter F (2020) The RNA fold interactome of evolutionary conserved RNA structures in S. cerevisiae. Nat Commun, 11:2789 Link

Doleželová E, Kunzová M, Dejung M, Levin M, Panicucci B, Regnault C, Janzen CJ, Barrett MP, Butter F and Zíková A (2020) Cell-based and multi-omics profiling reveals dynamic metabolic repurposing of mitochondria to drive developmental progression of Trypanosoma brucei. PLOS Biol, 18:e3000741 Link

Eisenhuth N, Vellmer T, Butter F# and Janzen CJ# (2020) A DOT1B/Ribonuclease H2 protein complex is involved in R-loop processing, genomic integrity and antigenic variation in Trypanosoma brucei. bioRxiv, doi: 10.1101/2020.03.02.969337 (#indicates joint correspondence) Link

Greither T*, Schumacher J*, Dejung M, Behre HM, Zischler H, Butter F and Herlyn H (2020) Fertility relevance probability analysis shortlists genetic markers for male fertility impairment. Cytogenet Genome Res, 160:506–522 (*indicates joint contribution) Link

Kiweler N*, Wünsch D*, Wirth M, Mahendrarajah N, Schneider G, Stauber RH, Brenner W, Butter F and Krämer OH (2020) Histone deacetylase inhibitors dysregulate DNA repair proteins and antagonize metastasis-associated processes. J Cancer Res Clin Oncol, 146:343–356 (*indicates joint contribution) Link

Leal AZ*, Schwebs M*, Briggs E, Weisert N, Reis H, Lemgruber L, Luko K, Wilkes J, Butter F, McCulloch R and Janzen CJ (2020) Genome maintenance functions of a putative Trypanosoma brucei translesion DNA polymerase include telomere association and a role in antigenic variation. Nucleic Acids Res, 48:9660–9680 (*joint contribution) Link

Levin M, Scheibe M and Butter F (2020) Proteotranscriptomics assisted gene annotation and spatial proteomics of Bombyx mori BmN4 cell line. BMC Genomics, 21:690 Link

Pérez-Martínez L, Öztürk M, Butter F# and Luke B# (2020) Npl3 stabilizes R-loops at telomeres to prevent accelerated replicative senescence. EMBO Rep, 21:e49087 (#indicates joint correspondance) Link

Scherer M, Levin M, Butter F and Scheibe M (2020) Quantitative proteomics to identify nuclear RNA-binding proteins of Malat1. Int J Mol Sci, 21:E1166 Link

Viceconte N*, Loriot A*, Lona Abreu P, Scheibe M, Fradera Sola A, Butter F, De Smet C, Azzalin CM, Arnoult N# and Decottignies A# (2020) PAR-TERRA is the main contributor to telomeric repeat-containing RNA transcripts in normal and cancer mouse cells. RNA, 27:106–121 (*indicates joint contribution, #indicates joint correspondence) Link

Warncke JD, Passecker A, Kipfer E, Brand F, Pérez-Martínez L, Proellochs NI, Kooij TWA, Butter F, Voss TS# and Beck HP# (2020) The PHIST protein GEXP02 targets the host cytoskeleton during sexual development of Plasmodium falciparum. Cell Microbiol, 22:e13123 (#indicates joint correspondence) Link

Zimmermann C, Krämer N, Krauter S, Strand D, Sehn E, Wolfrum U, Freiwald A, Butter F and Plachter B (2020) Autophagy interferes with human cytomegalovirus genome replication, morphogenesis, and progeny release. Autophagy, 1:1–17 Link


Bluhm A, Viceconte N, Li F, Rane G, Ritz S, Wang S, Levin M, Shi Y, Kappei D and Butter F (2019) ZBTB10 binds the telomeric variant repeat TTGGGG and interacts with TRF2. Nucleic Acids Res, 47:1896–1907 Link

Cordeiro Rodrigues RJ, de Jesus Domingues AM, Hellmann S, Dietz S, de Albuquerque BFM, Renz C, Ulrich HD, Sarkies P, Butter F and Ketting RF (2019) PETISCO is a novel protein complex required for 21U RNA biogenesis and embryonic viability. Genes Dev, 33:857–870 Link

Goos C, Dejung M, Wehman AM, M-Natus E, Schmidt J, Sunter J, Engstler M, Butter F# and Kramer S# (2019) Trypanosomes can initiate nuclear export co-transcriptionally. Nucleic Acids Res, 47:266–282 (#indicates joint correspondence) Link

Pons M, Nagel G, Zeyn Y, Beyer M, Laguna T, Brachetti T, Sellmer A, Mahboobi S, Conradi R, Butter F and Kramer OH (2019) Human platelet lysate as validated replacement for animal serum to assess chemosensitivity. ALTEX, 36:277–288 Link

Warncke JD, Passecker A, Kipfer E, Brand F, Pérez-Martínez L, Proellochs NI, Kooij TWA, Butter F, Voss TS# and Beck HP# (2019) The PHIST protein GEXP02 targets the host cytoskeleton during sexual development of Plasmodium falciparum. Cell Microbiol, 22:e13123 (#indicates joint correspondence) Link 

Wohlfahrt T, Rauber S, Uebe S, Luber M, Soare A, Ekici A, Weber S, Matei A-E, Chen C-W, Maier C, Karouzakis E, Kiener HP, Pachera E, Dees C, Beyer C, Daniel C, Gelse K, Kremer AE, Naschberger E, Stürzl M, Butter F, Sticherling M, Finotto S, Kreuter A, Kaplan MH, Jüngel A, Gay S, Nutt SL, Boykin DW, Poon GMK, Distler O, Schett G, Distler JHW and Ramming A (2019) PU.1 controls fibroblast polarization and tissue fibrosis. Nature, 566:344–349 Link


Almeida MV, Dietz S, Redl S, Karaulanov E, Hildebrandt A, Renz C, Ulrich HD, König J, Butter F and Ketting RF (2018) GTSF‐1 is required for formation of a functional RNA‐dependent RNA Polymerase complex in Caenorhabditis elegans. EMBO J, 37:e99325 Link

Baldi S, Jain DS, Harpprecht L, Zabel A, Scheibe M, Butter F, Straub T and Becker PB (2018) Genome-wide rules of nucleosome phasing in Drosophila. Mol Cell, 72:661–672.e4 Link

Becker K, Bluhm A*, Casas-Vila N*, Dinges N*, Dejung M, Sayols S, Kreutz C, Roignant J-Y, Butter F# and Legewie S# (2018) Quantifying post-transcriptional regulation in the development of Drosophila melanogaster. Nat Commun, 9:4970 (*indicates joint contribution, #indicates joint correspondence) Link

Charbonnel C, Rymarenko O, Da Ines O, Benyahya F, White CI, Butter F and Amiard S (2018) The linker histone GH1-HMGA1 is involved in telomere stability and DNA damage repair. Plant Physiol, 177:311–327 Link

Dal Magro C, Keller P, Kotter A, Werner S, Duarte V, Marchand V, Ignarski M, Freiwald A, Müller R-U, Dieterich C, Motorin Y, Butter F, Atta M and Helm M (2018) A vastly increased chemical variety of RNA modifications containing a thioacetal structure. Angew Chemie Int Ed, 57:7893–7897 Link

Harris CJ*, Scheibe M*, Wongpalee SP, Liu W, Cornett EM, Vaughan RM, Li X, Chen W, Xue Y, Zhong Z, Yen L, Barshop WD, Rayatpisheh S, Gallego-Bartolome J, Groth M, Wang Z, Wohlschlegel JA, Du J, Rothbart SB, Butter F# and Jacobsen SE# (2018) A DNA methylation reader complex that enhances gene transcription. Science, 362:1182–1186 (*indicates joint contribution, #indicates joint correspondence) Link

Kiweler N, Brill B, Wirth M, Breuksch I, Laguna T, Dietrich C, Strand S, Schneider G, Groner B, Butter F, Heinzel T, Brenner W and Krämer OH (2018) The histone deacetylases HDAC1 and HDAC2 are required for the growth and survival of renal carcinoma cells. Arch Toxicol, 92:2227–2243 Link

Pons M, Reichardt CM, Hennig D, Nathan A, Kiweler N, Stocking C, Wichmann C, Christmann M, Butter F, Reichardt S, Schneider G, Heinzel T, Englert C, Hartkamp J, Krämer OH and Mahendrarajah N (2018) Loss of Wilms tumor 1 protein is a marker for apoptosis in response to replicative stress in leukemic cells. Arch Toxicol, 92:2119–2135 Link

Reis H, Schwebs M, Dietz S, Janzen CJ and Butter F (2018) TelAP1 links telomere complexes with developmental expression site silencing in African trypanosomes. Nucleic Acids Res, 46:2820–2833 Link

Roovers EF*, Kaaij LJT*, Redl S, Bronkhorst AW, Wiebrands K, de Jesus Domingues AM, Huang HY, Han CT, Riemer S, Dosch R, Salvenmoser W, Grün D, Butter F, van Oudenaarden A and Ketting RF (2018) Tdrd6a regulates the aggregation of Buc into functional subcellular compartments that drive germ cell specification. Dev Cell, 46:285–301.e9 (*indicates joint contribution) Link

Winzi M, Casas Vila N, Paszkowski-Rogacz M, Ding L, Noack S, Theis M, Butter F and Buchholz F (2018) The long noncoding RNA lncR492 inhibits neural differentiation of murine embryonic stem cells. PLOS One, 13:e0191682 Link


Casas-Vila N*, Bluhm A*, Sayols S*, Dinges N, Dejung M, Altenhein T, Kappei D, Altenhein B, Roignant JY and Butter F (2017) The developmental proteome of Drosophila melanogaster. Genome Res, 27:1273–1285 (*indicates joint contribution) Link

Despic V, Dejung M, Butter F and Neugebauer KM (2017) Analysis of RNA-protein interactions in vertebrate embryos using UV crosslinking approaches. Methods, 126:44–53 Link

Despic V, Dejung M, Gu M, Krishnan J, Zhang J, Herzel L, Straube K, Gerstein MB, Butter F and Neugebauer KM (2017) Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition. Genome Res, 27:1184–1194 Link

Goos C, Dejung M, Janzen CJ, Butter F and Kramer S (2017) The nuclear proteome of Trypanosoma brucei. PLOS One, 12:e0181884 Link

Jahn A*, Rane G*, Paszkowski‐Rogacz M, Sayols S, Bluhm A, Han C, Draškovič I, Londoño‐Vallejo JA, Kumar AP, Buchholz F#, Butter F# and Kappei D# (2017) ZBTB48 is both a vertebrate telomere‐binding protein and a transcriptional activator. EMBO Rep, 18:929–946 (*indicates joint contribution, #indicates joint correspondence) Link

Kappei D*, Scheibe M*, Paszkowski-Rogacz M, Bluhm A, Gossmann TI, Dietz S, Dejung M, Herlyn H, Buchholz F#, Mann M# and Butter F# (2017) Phylointeractomics reconstructs functional evolution of protein binding. Nat Commun, 8:14334 (*indicates joint contribution, #indicates joint correspondence) Link

Lebedeva S, de Jesus Domingues AM, Butter F and Ketting RF (2017) Characterization of genetic loss-of-function of Fus in zebrafish. RNA Biol, 14:29–35 Link

Oswald F, Klöble P, Ruland A, Rosenkranz D, Hinz B, Butter F, Ramljak S, Zechner U and Herlyn H (2017) The FOXP2-driven network in developmental disorders and neurodegeneration. Front Cell Neurosci, 11:212 Link


Bluhm A, Casas-Vila N, Scheibe M and Butter F (2016) Reader interactome of epigenetic histone marks in birds. Proteomics, 16:427–436 Link

Cicova Z, Dejung M, Skalicky T, Eisenhuth N, Hanselmann S, Morriswood B, Figueiredo LM, Butter F# and Janzen CJ# (2016) Two flagellar BAR domain proteins in Trypanosoma brucei with stage-specific regulation. Sci Rep, 6:35826 (#indicates joint correspondence) Link

Dejung M, Subota I, Bucerius F, Dindar G, Freiwald A, Engstler M, Boshart M, Butter F# and Janzen CJ# (2016) Quantitative proteomics uncovers novel factors involved in developmental differentiation of trypanosoma brucei. PLOS Pathog, 12:e1005439 (#indicates joint correspondence) Link

Klassen R, Ciftci A, Funk J, Bruch A, Butter F and Schaffrath R (2016) tRNA anticodon loop modifications ensure protein homeostasis and cell morphogenesis in yeast. Nucleic Acids Res, 44:10946–10959 Link


Casas-Vila N, Scheibe M, Freiwald A, Kappei D and Butter F (2015) Identification of TTAGGG-binding proteins in Neurospora crassa, a fungus with vertebrate-like telomere repeats. BMC Genomics, 16:965 Link

Roovers EF, Rosenkranz D, Mahdipour M, Han CT, He N, Chuva de Sousa Lopes SM, van der Westerlaken LAJ, Zischler H, Butter F, Roelen BAJ and Ketting RF (2015) Piwi proteins and piRNAs in mammalian oocytes and early embryos. Cell Rep, 10:2069–2082 Link


Ericson M, Janes MA, Butter F, Mann M, Ullu E and Tschudi C (2014) On the extent and role of the small proteome in the parasitic eukaryote Trypanosoma brucei. BMC Biol, 12:14 Link

Hornburg D, Drepper C, Butter F, Meissner F, Sendtner M and Mann M (2014) Deep proteomic evaluation of primary and cell line motoneuron disease models delineates major differences in neuronal characteristics. Mol Cell Proteomics, 13:3410–3420 Link

Machyna M, Kehr S, Straube K, Kappei D, Buchholz F, Butter F, Ule J, Hertel J, Stadler PF and Neugebauer KM (2014) The coilin interactome identifies hundreds of small noncoding RNAs that traffic through cajal bodies. Mol Cell, 56:389–399 Link

Sharma NL, Massie CE, Butter F, Mann M, Bon H, Ramos-Montoya A, Menon S, Stark R, Lamb AD, Scott HE, Warren AY, Neal DE and Mills IG (2014) The ETS family member GABPα modulates androgen receptor signalling and mediates an aggressive phenotype in prostate cancer. Nucleic Acids Res, 42:6256–6269 Link


Butter F, Bucerius F, Michel M, Cicova Z, Mann M and Janzen CJ (2013) Comparative proteomics of two life cycle stages of stable isotope-labeled Trypanosoma brucei reveals novel components of the parasite’s host adaptation machinery. Mol Cell Proteomics, 12:172–179 Link

Kappei D*, Butter F*, Benda C, Scheibe M, Draškovič I, Stevense M, Novo CL, Basquin C, Araki M, Araki K, Krastev DB, Kittler R, Jessberger R, Londoño-Vallejo JA, Mann M and Buchholz F (2013) HOT1 is a mammalian direct telomere repeat-binding protein contributing to telomerase recruitment. EMBO J, 32:1681–1701 (*indicates joint contribution) Link

Klass DM, Scheibe M, Butter F, Hogan GJ, Mann M and Brown PO (2013) Quantitative proteomic analysis reveals concurrent RNA-protein interactions and identifies new RNA-binding proteins in Saccharomyces cerevisiae. Genome Res, 23:1028–1038 Link

Powers NR, Eicher JD, Butter F, Kong Y, Miller LL, Ring SM, Mann M and Gruen JR (2013) Alleles of a polymorphic ETV6 binding site in DCDC2 confer risk of reading and language impairment. Am J Hum Genet, 93:19–28 Link

Scheibe M, Arnoult N, Kappei D, Buchholz F, Decottignies A, Butter F# and Mann M# (2013) Quantitative interaction screen of telomeric repeatcontaining RNA reveals novel TERRA regulators. Genome Res, 23:2149–2157 (#indicates joint correspondence) Link

Viturawong T, Meissner F, Butter F# and Mann M# (2013) A DNA-centric protein interaction map of ultraconserved elements reveals contribution of transcription factor binding hubs to conservation. Cell Rep, 5:531–545 (#indicates joint correspondence) Link


Butter F, Davison L, Viturawong T, Scheibe M, Vermeulen M, Todd JA and Mann M (2012) Proteome-wide analysis of disease-associated SNPs that show allele-specific transcription factor binding. PLOS Genet, 8:e1002982 Link

Gregory AP, Dendrou CA, Attfield KE, Haghikia A, Xifara DK, Butter F, Poschmann G, Kaur G, Lambert L, Leach OA, Prömel S, Punwani D, Felce JH, Davis SJ, Gold R, Nielsen FC, Siegel RM, Mann M, Bell JI, McVean G and Fugger L (2012) TNF receptor 1 genetic risk mirrors outcome of anti-TNF therapy in multiple sclerosis. Nature, 488:508–511 Link

Scheibe M, Butter F, Hafner M, Tuschl T and Mann M (2012) Quantitative mass spectrometry and PAR-CLIP to identify RNA-protein interactions. Nucleic Acids Res, 40:9897–9902 Link


Butter F, Kappei D, Buchholz F, Vermeulen M and Mann M (2010) A domesticated transposon mediates the effects of a single-nucleotide polymorphism responsible for enhanced muscle growth. EMBO Rep, 11:305–311 Link

Vermeulen M, Eberl HC, Matarese F, Marks H, Denissov S, Butter F, Lee KK, Olsen J V., Hyman AA, Stunnenberg HG and Mann M (2010) Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers. Cell, 142:967–980 Link


Butter F, Scheibe M, Mörl M and Mann M (2009) Unbiased RNA-protein interaction screen by quantitative proteomics. Proc Natl Acad Sci USA, 106:10626–10631 Link

Mittler G, Butter F and Mann M (2009) A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements. Genome Res, 19:284–293 Link


Just A, Butter F, Trenkmann M, Heitkam T, Mörl M and Betat H (2008) A comparative analysis of two conserved motifs in bacterial poly(A) polymerase and CCA-adding enzyme. Nucleic Acids Res, 36:5212–5220 Link